olfactorybulb.paramsets

class olfactorybulb.paramsets.base.ParameterSetBase

Bases: olfactorybulb.paramsets.base.SilentNetwork

class olfactorybulb.paramsets.base.SilentNetwork

Bases: object

description = 'A base, silent network with mild odor input and all synapses blocked'

gap_juction_gmax = {'MC': 0, 'TC': 0}

inhale_duration = 125

input_odors = {0: {'name': 'Apple', 'rel_conc': 0.1}, 200: {'name': 'Apple', 'rel_conc': 0.2}, 400: {'name': 'Apple', 'rel_conc': 0.2}, 600: {'name': 'Apple', 'rel_conc': 0.2}, 800: {'name': 'Apple', 'rel_conc': 0.2}, 1000: {'name': 'Apple', 'rel_conc': 0.2}, 1200: {'name': 'Apple', 'rel_conc': 0.2}, 1400: {'name': 'Apple', 'rel_conc': 0.2}, 1600: {'name': 'Apple', 'rel_conc': 0.2}, 1800: {'name': 'Apple', 'rel_conc': 0.2}}

input_syn_tau1 = 6

input_syn_tau2 = 12

lfp_electrode_location = [116, 1078, -61]

max_firing_rate = 150

mc_input_delay = 50

mc_input_weight = 0

property name

record_from_somas = ['MC', 'TC', 'GC']

recording_period = 0.1

rnd_seed = 0

sim_dt = 0.1

slice_dir = 'olfactorybulb/slices'

slice_name = 'DorsalColumnSlice'

synapse_properties = {'AmpaNmdaSyn': {'gmax': 0, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 0, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 100}}

tc_input_delay = 0

tc_input_weight = 0

tstop = 800.1

class olfactorybulb.paramsets.case_studies.GammaSignature

Bases: olfactorybulb.paramsets.case_studies.MC_TC_Combined_Base

mc_input_delay = 0

mc_input_weight = 0.2

sniffs = 8

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

tc_input_weight = 0.8

tstop = 1800

class olfactorybulb.paramsets.case_studies.GammaSignature_DifferentOdor

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

input_odors = {0: {'name': 'Apple', 'rel_conc': 0.1}, 200: {'name': 'Coffee', 'rel_conc': 0.2}, 400: {'name': 'Mint', 'rel_conc': 0.2}, 600: {'name': 'Apple', 'rel_conc': 0.2}, 800: {'name': 'Mint', 'rel_conc': 0.2}, 1000: {'name': 'Coffee', 'rel_conc': 0.2}, 1200: {'name': 'Apple', 'rel_conc': 0.2}, 1400: {'name': 'Mint', 'rel_conc': 0.2}, 1600: {'name': 'Mint', 'rel_conc': 0.2}, 1800: {'name': 'Apple', 'rel_conc': 0.2}}

class olfactorybulb.paramsets.case_studies.GammaSignature_DifferentOdorConc

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

input_odors = {0: {'name': 'Apple', 'rel_conc': 0.1}, 200: {'name': 'Apple', 'rel_conc': 0.05}, 400: {'name': 'Apple', 'rel_conc': 0.1}, 600: {'name': 'Apple', 'rel_conc': 0.15}, 800: {'name': 'Apple', 'rel_conc': 0.2}, 1000: {'name': 'Apple', 'rel_conc': 0.25}, 1200: {'name': 'Apple', 'rel_conc': 0.3}, 1400: {'name': 'Apple', 'rel_conc': 0.35}, 1600: {'name': 'Apple', 'rel_conc': 0.4}, 1800: {'name': 'Apple', 'rel_conc': 0.45}}

class olfactorybulb.paramsets.case_studies.GammaSignature_EqualTCMCInputs

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

description = 'Increasing MC input weight to match TCs should advance MC first spike times'

mc_input_weight = 0.8

tc_input_weight = 0.8

class olfactorybulb.paramsets.case_studies.GammaSignature_NoInhibition

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

__init__()

Initialize self. See help(type(self)) for accurate signature.

description = 'Disabling inhibition should advance MC first spike times'

class olfactorybulb.paramsets.case_studies.GammaSignature_NoMCGJs

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

__init__()

Initialize self. See help(type(self)) for accurate signature.

description = 'Disabling MC GJs should abolish synchronized late MC firing'

class olfactorybulb.paramsets.case_studies.GammaSignature_NoTCGJs

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

__init__()

Initialize self. See help(type(self)) for accurate signature.

description = 'Disabling TC GJs should abolish synchronized early TC firing'

class olfactorybulb.paramsets.case_studies.MC_TC_Combined_Base

Bases: olfactorybulb.paramsets.case_studies.TCsWithGJsGCs

gap_juction_gmax = {'MC': 32, 'TC': 32}

mc_input_weight = 1.0

tc_input_weight = 1.0

class olfactorybulb.paramsets.case_studies.MCsWithGJsGCs

Bases: olfactorybulb.paramsets.base.SilentNetwork

gap_juction_gmax = {'MC': 32}

mc_input_weight = 1.0

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 16}}

tstop = 400

class olfactorybulb.paramsets.case_studies.OneMsTest

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

description = 'Test of the simulation, for build testing only'

tstop = 1

class olfactorybulb.paramsets.case_studies.PureMCs

Bases: olfactorybulb.paramsets.base.SilentNetwork

description = 'Pure MC input'

mc_input_weight = 1.0

class olfactorybulb.paramsets.case_studies.PureMCsWithGJs

Bases: olfactorybulb.paramsets.base.SilentNetwork

description = 'Pure MC input and enabled gap junctions'

gap_juction_gmax = {'MC': 32}

mc_input_weight = 1.0

class olfactorybulb.paramsets.case_studies.PureTCs

Bases: olfactorybulb.paramsets.base.SilentNetwork

description = 'Pure TC input'

tc_input_weight = 1.0

class olfactorybulb.paramsets.case_studies.PureTCsWithGJs

Bases: olfactorybulb.paramsets.base.SilentNetwork

description = 'Pure TC input and enabled gap junctions'

gap_juction_gmax = {'TC': 32}

tc_input_weight = 1.0

class olfactorybulb.paramsets.case_studies.TCsWithGJsGCs

Bases: olfactorybulb.paramsets.base.SilentNetwork

gap_juction_gmax = {'TC': 32}

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 16}}

tc_input_weight = 1.0

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_0

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 0, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_1

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 1, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_128

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 128, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_16

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 16, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_2

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_256

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 256, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_32

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 32, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_4

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 4, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_64

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_AMPANMDA_8

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 8, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GABA_0

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 0, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GABA_1

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 1, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GABA_2

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 2, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GABA_4

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 4, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GABA_8

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

synapse_properties = {'AmpaNmdaSyn': {'gmax': 64, 'ltdinvl': 0, 'ltpinvl': 0}, 'GabaSyn': {'gmax': 8, 'ltdinvl': 0, 'ltpinvl': 0, 'tau2': 36}}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_0

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 0, 'TC': 0}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_1

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 1, 'TC': 1}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_128

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 128, 'TC': 128}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_16

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 16, 'TC': 16}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_2

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 2, 'TC': 2}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_32

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 32, 'TC': 32}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_4

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 4, 'TC': 4}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_64

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 64, 'TC': 64}

class olfactorybulb.paramsets.sensitivity.GammaSignature_GJ_8

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

gap_juction_gmax = {'MC': 8, 'TC': 8}

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_00

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_01

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.1

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_015

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.15

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_02

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.2

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_025

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.25

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_03

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.3

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_04

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.4

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_06

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.6

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_08

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 0.8

class olfactorybulb.paramsets.sensitivity.GammaSignature_MCWGHT_10

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

mc_input_weight = 1

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_00

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 0

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_02

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 0.2

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_04

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 0.4

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_06

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 0.6

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_08

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 0.8

class olfactorybulb.paramsets.sensitivity.GammaSignature_TCWGHT_10

Bases: olfactorybulb.paramsets.case_studies.GammaSignature

tc_input_weight = 1